miRBase entry: aly-MIR841

Stem-loop aly-MIR841


Accession
MI0015780
Description
Arabidopsis lyrata aly-MIR841 precursor miRNA
Gene family
MIPF0001112; MIR841


Sequence

gcaccaacucuaccaugugcagaaacuauggucuugaguugccugugaaUACGACCCACUGGAAACUAAAauaaacaaagaaacaguaucagugugaaauuucauaaaauuagaguacaaagagacaugaaauuucuuuguuuacuucaguuuuugaugggucguauucacaugcaacucaggaccagaguaucuacacauggucgacuuggug
.((((((.((.((((((((.(((.(((.((((((((((((((.(((((((((((((((.((((((((.((.((((((((((((((((.((..((((....(((.........)))))))..)).)).))...)))))))))))).)).)))))))).))))))))))))))).)))))))))))))).))).))).)))))))).)).))))))

Structure
g      c  u        c   a   a              c               C        A  a            ---  -  a  ag    aaau   aua 
 caccaa uc accaugug aga acu uggucuugaguugc ugugaaUACGACCCA UGGAAACU AA uaaacaaagaaa   ca gu uc  ugug    uuc   a
 |||||| || |||||||| ||| ||| |||||||||||||| ||||||||||||||| |||||||| || ||||||||||||   || || ||  ||||    |||   a
 gugguu ag ugguacac ucu uga accaggacucaacg acacuuaugcugggu guuuuuga uu auuuguuucuuu   gu ca ag  acau    gag   a
-      c  c        a   a   g              u               a        c  c            aaa  a  g  aa    ----   auu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348719.1: 15200291-15200504 [-]

Database links

Mature aly-miR841

Accession MIMAT0017907
Description Arabidopsis lyrata aly-miR841 mature miRNA
Sequence 50 - UACGACCCACUGGAAACUAAA - 70
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103