miRBase entry: cin-mir-4172

Stem-loop cin-mir-4172


Accession
MI0015727
Description
Ciona intestinalis cin-mir-4172 precursor miRNA


Sequence

aaguauaaugucauaaucauugugaugucauuauUAUUAUGUCAUAUAUUUAG
(((((((.((.((((((.((.(((....))).)).)))))).)))))))))..

Structure
--       a  u      c  u   a 
  aaguaua ug cauaau au gug u
  ||||||| || |||||| || |||  
  UUUAUAU AC GUAUUA ua uac g
GA       -  U      U  u   u 


Annotation confidence Not enough data
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Genome context
scaffold_2290: 1714-1766 [+]

Database links

Mature cin-miR-4172-3p

Accession MIMAT0016780
Description Ciona intestinalis cin-miR-4172-3p mature miRNA
Sequence 35 - UAUUAUGUCAUAUAUUUAG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39