Stem-loop sequence rno-mir-328b

Accession

MI0015479 (change log)

Description

Rattus norvegicus miR-328b stem-loop

Literature search

16 open access papers mention rno-mir-328b
(244 sentences)

Stem-loop

        ---a   gg  g    gaag   cga   a     -u   a   -       -a    c 
5' ggagg    ggg  ag gagg    ggg   ggg ggggc  aga ggu agucggc  gaug a
   |||||    |||  || ||||    |||   ||| |||||  ||| ||| |||||||  ||||  
3' ccucc    ccc  uc cucc    ccc   ccc ucccg  ucu ccg ucggucg  uuac a
        ggug   aa  a    ---a   ---   a     uc   c   g       ga    c 

Deep sequencing

33533 reads, 22.2 reads per million, 472 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr14: 45331146-45331263 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir328b
• miRBase Tracker:MI0015479

Mature sequence rno-miR-328b-3p

• Accession: MIMAT0017904
• Sequence: 73 - cuggcccucucugcccua - 90
• Deep sequencing: 33517 reads, 472 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-328b-3p
  • miRDB:rno-miR-328b-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).