miRBase entry: rno-mir-328b

Stem-loop rno-mir-328b


Accession
MI0015479
Description
Rattus norvegicus rno-mir-328b precursor miRNA

Literature search
16 open access papers mention rno-mir-328b
(245 sentences)

Sequence

312 reads, 4 reads per million, 137 experiments
ggaggagggggagggagggaaggggcgagggaggggcuagaagguagucggcagaugcaaccauuaggcuggCUGGCCCUCUCUGCCCUAccccccaccucacuaacccguggccucc
(((((..((((((((.(((..(((((.((((((((.(........(((((((.((((....))))..)))))))).)))))))))))))..))).).)))).....)))....)))))

Structure
     --ag   -----    - a   aa     g        g uagaaggu       -a    c 
ggagg    ggg     gagg g ggg  ggggc agggaggg c        agucggc  gaug a
|||||    |||     |||| | |||  ||||| |||||||| |        |||||||  ||||  
ccucc    ccc     cucc c ccc  UCCCG UCUCUCCC G        UCggucg  uuac a
     ggug   aauca    a c   cA     -        G --------       ga    c 


Annotation confidence Not enough data
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Genome context
chr14: 45331146-45331263 [+]

Database links

Mature rno-miR-328b-3p

Accession MIMAT0017904
Description Rattus norvegicus rno-miR-328b-3p mature miRNA
Sequence 73 - CUGGCCCUCUCUGCCCUA - 90
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249