Stem-loop sequence rno-mir-741

Accession

MI0015477 (change log)

Description

Rattus norvegicus miR-741 stem-loop

Gene family

MIPF0000386; mir-743

Literature search

3 open access papers mention rno-mir-741
(15 sentences)

Stem-loop

   -      uc   u  a             au     c  a   ug aa 
5'  aauguc  aug gc uuggucuacauag  uggua cu uca  u  a
    ||||||  ||| || |||||||||||||  ||||| || |||  |  a
3'  uuacag  uac cg aacuagauguauc  accgu ga agu  g  u
   c      --   u  c             gc     a  a   gu aa 

Deep sequencing

9633 reads, 277 reads per million, 91 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 151274356-151274451 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-741

• rno-mir-881: chrX: 151283910-151283986 [-]
• rno-mir-878: chrX: 151283461-151283537 [-]
• rno-mir-880: chrX: 151281988-151282065 [-]
• rno-mir-463: chrX: 151276029-151276106 [-]
• rno-mir-741: chrX: 151274356-151274451 [-]
• rno-mir-3551: chrX: 151272824-151272905 [-]
• rno-mir-471: chrX: 151272104-151272181 [-]

Database links

• EntrezGene:Mir741
• miRBase Tracker:MI0015477

Mature sequence rno-miR-741-5p

• Accession: MIMAT0017901
• Sequence: 22 - uacauagauugguaccuauca - 42
• Deep sequencing: 5 reads, 5 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-741-5p
  • miRDB:rno-miR-741-5p

Mature sequence rno-miR-741-3p

• Accession: MIMAT0017902
• Sequence: 58 - aaagaugccacgcuauguagau - 79
• Deep sequencing: 9627 reads, 91 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-741-3p
  • miRDB:rno-miR-741-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).