miRBase entry: rno-mir-2985

Stem-loop rno-mir-2985


Accession
MI0015469
Description
Rattus norvegicus rno-mir-2985 precursor miRNA
Gene family
MIPF0001067; mir-2985

Literature search
1 open access papers mention rno-mir-2985
(1 sentences)

Sequence

366 reads, 1177 reads per million, 74 experiments
aucgccacaccuaaaggauccucauuaagguggguggaauaguauaacaaugugcucaauguUGUUAUAGUAUCCCACCUACCCugaugugucuuuaagacucuaacggu
..........((.((((((...(((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).))))).)))))).))...........

Structure
-aucgccacac  a      ccu     a         a   g           g 
           cu aaggau   cauua ggugggugg aua uauaacaaugu c
           || ||||||   ||||| ||||||||| ||| ||||||||||| u
           ga uuucug   guagu CCAUCCACC UAU AUAUUGUugua c
uggcaaucuca  a      --u     C         C   G           a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 179591312-179591421 [-]

Database links

Mature rno-miR-2985

Accession MIMAT0017891
Description Rattus norvegicus rno-miR-2985 mature miRNA
Sequence 63 - UGUUAUAGUAUCCCACCUACCC - 84
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249