miRBase entry: rno-mir-3586

Stem-loop rno-mir-3586


Accession
MI0015461
Description
Rattus norvegicus rno-mir-3586 precursor miRNA
Gene family
MIPF0000057; mir-28

Literature search
1 open access papers mention rno-mir-3586
(4 sentences)

Sequence

2242387 reads, 2 reads per million, 506 experiments
cgggaggugaguaugacgaUCCCUGUCCUCAAGGAGccucagucuaguagggaggagacAUACUAGACUGUGAGCUCCUCGAgggcaggaaagcgcuccaucaucugugcuccaugccca
.(((....((((((((((...(((((((((.(((((((.(((((((((((........).)))))))))).).)))))).)))))))))....)).))........))))))....))).

Structure
c   aggu      --------  -  -aUC         A      - u          - gga 
 ggg    gaguau        ga cg    CCUGUCCUC AGGAGc c cagucuagua g   g
 |||    ||||||        || ||    ||||||||| |||||| | |||||||||| |    
 ccc    cucgug        cu gc    ggacgggAG UCCUCG G GUCAGAUCAU c   g
a   guac      ucuacuac  c  gaaa         C      A U          A aga 


Annotation confidence Not enough data
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Genome context
chr7: 114485547-114485666 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3586
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3586-5p

Accession MIMAT0017880
Description Rattus norvegicus rno-miR-3586-5p mature miRNA
Sequence 20 - UCCCUGUCCUCAAGGAG - 36
Evidence experimental
SOLiD [1]

Mature rno-miR-3586-3p

Accession MIMAT0017881
Description Rattus norvegicus rno-miR-3586-3p mature miRNA
Sequence 60 - AUACUAGACUGUGAGCUCCUCGA - 82
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249