Stem-loop sequence rno-mir-3586

Accession

MI0015461 (change log)

Description

Rattus norvegicus miR-3586 stem-loop

Gene family

MIPF0000057; mir-28

Literature search

1 open access papers mention rno-mir-3586
(4 sentences)

Stem-loop

   c   -ag u      --------  -  -auc         a      - u          ggga g 
5'  ggg   g gaguau        ga cg    ccuguccuc aggagc c cagucuagua    g a
    |||   | ||||||        || ||    ||||||||| |||||| | ||||||||||    |  
3'  ccc   c cucgug        cu gc    ggacgggag uccucg g gucagaucau    c g
   a   gua -      ucuacuac  c  gaaa         c      a u          ---a a 

Deep sequencing

8801 reads, 0 reads per million, 456 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr7: 114485547-114485666 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000011219 ; Ptk2-201; intron 21

Clustered miRNAs

< 10kb from rno-mir-3586

• rno-mir-3586: chr7: 114485547-114485666 [+]
• rno-mir-151: chr7: 114485547-114485643 [-]

Database links

• EntrezGene:Mir3586
• miRBase Tracker:MI0015461

Mature sequence rno-miR-3586-5p

• Accession: MIMAT0017880
• Sequence: 20 - ucccuguccucaaggag - 36
• Deep sequencing: 993 reads, 291 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3586-5p
  • miRDB:rno-miR-3586-5p

Mature sequence rno-miR-3586-3p

• Accession: MIMAT0017881
• Sequence: 60 - auacuagacugugagcuccucga - 82
• Deep sequencing: 7804 reads, 450 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3586-3p
  • miRDB:rno-miR-3586-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).