Stem-loop rno-mir-409b

Accession

MI0015454

Description

Rattus norvegicus rno-mir-409b precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

6 open access papers mention rno-mir-409b
(13 sentences)

Sequence

216596 reads, 0 reads per million, 450 experiments

uugauaccgaaaAGGGGUUCACCGAGCAACAUUCGuccuccagaugcaaaguugcucggguaaccucucuccgaguacca
.((.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).))

Structure

u  a   -  aaa       CA         A  -    c 
 ug uac cg   AGGGGUU  CCGAGCAAC UU CGuc u
 || ||| ||   |||||||  ||||||||| || |||| c
 ac aug gc   ucuccaa  ggcucguug aa guag c
-  c   a  cuc       ug         a  c    a 

Annotation confidence Not enough data

Genome context

chr6: 133893418-133893497 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-409b

Mature rno-miR-409b

• Accession: MIMAT0017870
• Description: Rattus norvegicus rno-miR-409b mature miRNA
• Sequence: 13 - AGGGGUUCACCGAGCAACAUUCG - 35
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249