Stem-loop sequence rno-mir-3579

Accession

MI0015452 (change log)

Description

Rattus norvegicus miR-3579 stem-loop

Stem-loop

   acccuccacgaaugacuuugauaa          -ug       cu    a  ac  a 
5'                         ugagaagaug   gaccaua  acau cg  ac g
                           ||||||||||   |||||||  |||| ||  ||  
3'                         acuuuucuac   cugguau  ugua gc  ug a
   ----gugggagagagguaccaugg          caa       cu    c  ga  a 

Deep sequencing

5 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133860473-133860585 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3579

• rno-mir-667: chr6: 133869570-133869661 [+]
• rno-mir-495: chr6: 133868288-133868367 [+]
• rno-mir-543: chr6: 133866660-133866739 [+]
• rno-mir-666: chr6: 133866523-133866621 [+]
• rno-mir-1193: chr6: 133864698-133864817 [+]
• rno-mir-679: chr6: 133864564-133864700 [+]
• rno-mir-494: chr6: 133864370-133864452 [+]
• rno-mir-329: chr6: 133862168-133862264 [+]
• rno-mir-758: chr6: 133861498-133861575 [+]
• rno-mir-323: chr6: 133861199-133861284 [+]
• rno-mir-380: chr6: 133860490-133860566 [+]
• rno-mir-3579: chr6: 133860473-133860585 [-]
• rno-mir-299a: chr6: 133859324-133859386 [+]
• rno-mir-299b: chr6: 133859295-133859412 [-]
• rno-mir-411: chr6: 133858849-133858924 [+]
• rno-mir-379: chr6: 133857700-133857784 [+]

Database links

• EntrezGene:Mir3579
• miRBase Tracker:MI0015452

Mature sequence rno-miR-3579

• Accession: MIMAT0017867
• Sequence: 64 - gcgcauguucuauggucaacca - 85
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3579
  • miRDB:rno-miR-3579

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).