miRBase entry: rno-mir-3577

Stem-loop rno-mir-3577


Accession
MI0015449
Description
Rattus norvegicus rno-mir-3577 precursor miRNA

Literature search
4 open access papers mention rno-mir-3577
(6 sentences)

Sequence

2369 reads, 12 reads per million, 340 experiments
acgugguccuuaguggagguuugcuuguuauaggggcuaagaggggccaggcgugccugucaucaUCUGUCCCUCUUGGCCCUUAGgcucggcaugcuaccuauggcauccgu
(((.(((((.(((.(..(((.((((.((..(((((((((((((((((((((....)))).........))))))))))))))))).))..)))).))).)))).)).))))))

Structure
   u   -  u   u ga   u    -u  ua                 ---------    c 
acg ggu cc uag g  ggu ugcu  gu  uaggggcuaagaggggc         cagg g
||| ||| || ||| |  ||| ||||  ||  |||||||||||||||||         ||||  
ugc cua gg auc c  ucg acgg  cg  AUUCCCGGUUCUCCCUG         gucc u
   -   c  u   - -a   u    cu  -G                 UCUacuacu    g 


Annotation confidence Not enough data
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Genome context
chr10: 104340708-104340820 [+]

Database links

Mature rno-miR-3577

Accession MIMAT0017863
Description Rattus norvegicus rno-miR-3577 mature miRNA
Sequence 66 - UCUGUCCCUCUUGGCCCUUAG - 86
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249