Stem-loop sequence rno-mir-3576

AccessionMI0015448 (change log)
DescriptionRattus norvegicus miR-3576 stem-loop
Gene family MIPF0001166; mir-3578
Literature search

1 open access papers mention rno-mir-3576
(1 sentences)

Stem-loop 
      -  cagg  - g a   g     c  aa        c     -ua  auuca  c 
5' ucc gc    gc a u uuu auacu ga  agaaauua ccuug   ug     uc a
   ||| ||    || | | ||| ||||| ||  |||||||| |||||   ||     || a
3' agg cg    cg u a aaa uauga cu  ucuuuaau ggaac   ac     ag a
      a  -aca  a g c   g     a  cc        a     cac  aaacg  a
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 133877812-133877926 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-3576
rno-mir-485chr6: 133885299-133885377 [+]
rno-mir-668chr6: 133885141-133885208 [+]
rno-mir-134chr6: 133884547-133884619 [+]
rno-mir-382chr6: 133884178-133884257 [+]
rno-mir-3592chr6: 133884161-133884276 [-]
rno-mir-544chr6: 133879169-133879246 [+]
rno-mir-6331chr6: 133878578-133878700 [+]
rno-mir-539chr6: 133877832-133877907 [+]
rno-mir-3576chr6: 133877812-133877926 [-]
rno-mir-487bchr6: 133877124-133877205 [+]
rno-mir-381chr6: 133876615-133876675 [+]
rno-mir-300chr6: 133874152-133874230 [+]
rno-mir-376achr6: 133873605-133873686 [+]
rno-mir-3595chr6: 133873587-133873706 [-]
rno-mir-376bchr6: 133873095-133873180 [+]
rno-mir-376cchr6: 133872439-133872522 [+]
rno-mir-667chr6: 133869570-133869661 [+]
rno-mir-495chr6: 133868288-133868367 [+]
Database links

Mature sequence rno-miR-3576

Accession MIMAT0017862
Sequence

66 -  

acacaccaaggauaauuucucc

 - 87

Get sequence
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).