Stem-loop rno-mir-1193

Accession

MI0015445

Description

Rattus norvegicus rno-mir-1193 precursor miRNA

Gene family

MIPF0000714; mir-1193

Literature search

1 open access papers mention rno-mir-1193
(1 sentences)

Sequence

6994 reads, 22 reads per million, 314 experiments

ggugcuuacugcucucaggguagcugugaggAUGGUAAACCGGUGACGUGCacuucauuuaugcugUAGGUCACCCGUUUUACUAUCCgccagcacccagaccgucugugggaugauacc
(((((((((.((..((.((((.((((.(.(((((((((((.((((((.(((((.........).)))).)))))).).)))))))))).))))))))).))..))..)))))....))))

Structure

    ----     -u  uc  a    a    u a          - C      G    - uuc 
ggug    cuuac  gc  uc gggu gcug g ggAUGGUAAA C GGUGAC UGCa c   a
||||    |||||  ||  || |||| |||| | |||||||||| | |||||| |||| |   u
ccau    gggug  ug  ag ccca cgac c CCUAUCAUUU G CCACUG AUgu g   u
    agua     uc  cc  a    -    - g          U C      G    c uau 

Annotation confidence High

Genome context

chr6: 133864698-133864817 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-1193

Mature rno-miR-1193-5p

• Accession: MIMAT0017858
• Description: Rattus norvegicus rno-miR-1193-5p mature miRNA
• Sequence: 32 - AUGGUAAACCGGUGACGUGC - 51
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-1193-3p

• Accession: MIMAT0017859
• Description: Rattus norvegicus rno-miR-1193-3p mature miRNA
• Sequence: 67 - UAGGUCACCCGUUUUACUAUCC - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249