miRBase entry: rno-mir-1949

Stem-loop rno-mir-1949


Accession
MI0015441
Description
Rattus norvegicus rno-mir-1949 precursor miRNA
Gene family
MIPF0001139; mir-1949

Literature search
4 open access papers mention rno-mir-1949
(10 sentences)

Sequence

547 reads, 28 reads per million, 236 experiments
gggagaaaagcagccaauagcugguuggcauucugggccugguucaugccaacucuguuguuaacUAUACCAGGAUGUCAGCAUAGUUgcuuaccca
(((....(((((.......(((((((((((((((((...(((((.....((((...))))..)))))..))))))))))))).))))))))).))).

Structure
-   agaa     gccaaua    -             gcc     caugc    u 
 ggg    aagca       gcug guuggcauucugg   ugguu     caac  
 |||    |||||       |||| |||||||||||||   |||||     |||| c
 ccc    uucgU       UGAU CGACUGUAGGACC   AUcaa     guug  
a   ---a     -------    A             -AU     ---uu    u 


Annotation confidence Low
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Genome context
chr18: 28353149-28353245 [+]

Database links

Mature rno-miR-1949

Accession MIMAT0017852
Description Rattus norvegicus rno-miR-1949 mature miRNA
Sequence 66 - UAUACCAGGAUGUCAGCAUAGUU - 88
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249