Stem-loop sequence rno-mir-1949

AccessionMI0015441 (change log)
DescriptionRattus norvegicus miR-1949 stem-loop
Gene family MIPF0001139; mir-1949
Literature search

4 open access papers mention rno-mir-1949
(10 sentences)

   -   agaa       caa  gcug             gcc     c  gc  a 
5'  ggg    aagcagc   ua    guuggcauucugg   ugguu au  ca c
    |||    |||||||   ||    |||||||||||||   ||||| ||  ||  
3'  ccc    uucguug   au    cgacuguaggacc   aucaa ug  gu u
   a   ---a       ---  ---a             -au     u  uu  c 
Get sequence
Deep sequencing
586 reads, 0 reads per million, 240 experiments
Confidence Annotation confidence: low
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr18: 28353149-28353245 [+]
Database links

Mature sequence rno-miR-1949

Accession MIMAT0017852

66 - 


 - 88

Get sequence
Deep sequencing569 reads, 238 experiments
Evidence experimental; SOLiD [1]
Predicted targets


PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).