Stem-loop sequence rno-mir-1949

Accession

MI0015441 (change log)

Description

Rattus norvegicus miR-1949 stem-loop

Gene family

MIPF0001139; mir-1949

Literature search

4 open access papers mention rno-mir-1949
(10 sentences)

Stem-loop

   -   agaa       caa  gcug             gcc     c  gc  a 
5'  ggg    aagcagc   ua    guuggcauucugg   ugguu au  ca c
    |||    |||||||   ||    |||||||||||||   ||||| ||  ||  
3'  ccc    uucguug   au    cgacuguaggacc   aucaa ug  gu u
   a   ---a       ---  ---a             -au     u  uu  c 

Deep sequencing

586 reads, 0 reads per million, 240 experiments

Confidence

Annotation confidence: low

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr18: 28353149-28353245 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir1949
• miRBase Tracker:MI0015441

Mature sequence rno-miR-1949

• Accession: MIMAT0017852
• Sequence: 66 - uauaccaggaugucagcauaguu - 88
• Deep sequencing: 569 reads, 238 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-1949
  • miRDB:rno-miR-1949

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).