miRBase entry: rno-mir-3571

Stem-loop rno-mir-3571


Accession
MI0015440
Description
Rattus norvegicus rno-mir-3571 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention rno-mir-3571
(1 sentences)

Sequence

124829 reads, 1 reads per million, 259 experiments
uuggcggacauuaccuacccaaaaUACACACUUCUUUACAUUCCAUAgcauucuauguucauauggguacauaaagaaguaugugcucugaguaggcacuauugugccgau
((((((.(.....(((((.((...((((.(((((((((...((((((((((...))))...))))))....))))))))).))))...)).)))))......).)))))).

Structure
-      g -cauua     c  aaa    C         -CAU      ---    u 
 uuggcg a      ccuac ca   UACA ACUUCUUUA    UCCAUA   gcau  
 |||||| |      ||||| ||   |||| |||||||||    ||||||   |||| c
 agccgu u      ggaug gu   gugu ugaagaaau    ggguau   ugua  
u      g uaucac     a  cuc    a         acau      acu    u 


Annotation confidence Not enough data
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Genome context
chr18: 2054922-2055032 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-3571
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3571

Accession MIMAT0017851
Description Rattus norvegicus rno-miR-3571 mature miRNA
Sequence 25 - UACACACUUCUUUACAUUCCAUA - 47
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249