Stem-loop sequence rno-mir-3571

Accession

MI0015440 (change log)

Description

Rattus norvegicus miR-3571 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

1 open access papers mention rno-mir-3571
(1 sentences)

Stem-loop

   -      g -cauua     c  a a    c         -cau      ---      
5'  uuggcg a      ccuac ca a uaca acuucuuua    uccaua   gcauu 
    |||||| |      ||||| || | |||| |||||||||    ||||||   |||| c
3'  agccgu u      ggaug gu u gugu ugaagaaau    ggguau   uguau 
   u      g uaucac     a  c c    a         acau      acu      

Deep sequencing

8 reads, 0 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr18: 2054922-2055032 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000018025 ; Mib1-201; intron 12

Clustered miRNAs

< 10kb from rno-mir-3571

• rno-mir-133c: chr18: 2052459-2052576 [+]
• rno-mir-133a: chr18: 2052478-2052564 [-]
• rno-mir-3571: chr18: 2054922-2055032 [+]
• rno-mir-1: chr18: 2054933-2055019 [-]

Database links

• EntrezGene:Mir3571
• miRBase Tracker:MI0015440

Mature sequence rno-miR-3571

• Accession: MIMAT0017851
• Sequence: 25 - uacacacuucuuuacauuccaua - 47
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3571
  • miRDB:rno-miR-3571

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).