miRBase entry: rno-mir-208b

Stem-loop rno-mir-208b


Accession
MI0015434
Description
Rattus norvegicus rno-mir-208b precursor miRNA
Gene family
MIPF0000178; mir-208

Literature search
39 open access papers mention rno-mir-208b
(201 sentences)

Sequence

181738 reads, 485 reads per million, 202 experiments
acccccaccuccugcuccucucagggAAGCUUUUUGCUCGCGUUAUguuucucauccgaauAUAAGACGAACAAAAGGUuugucugagggcugagugcacccaccuggggua
(((((........((((((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).))))))))..))))..........))))).

Structure
-     --caccuccu    --        g          C   CG        cu 
 acccc          gcuc  cucucagg AAGCUUUUUG UCG  UUAUguuu  c
 |||||          ||||  |||||||| |||||||||| |||  ||||||||  a
 ugggg          ugag  gggagucu uuUGGAAAAC AGC  AAUAuaag  u
a     uccacccacg    uc        g          A   AG        cc 


Annotation confidence High
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Genome context
chr15: 33639510-33639621 [-]

Database links

Mature rno-miR-208b-5p

Accession MIMAT0017844
Description Rattus norvegicus rno-miR-208b-5p mature miRNA
Sequence 27 - AAGCUUUUUGCUCGCGUUAU - 46
Evidence experimental
SOLiD [1]

Mature rno-miR-208b-3p

Accession MIMAT0017845
Description Rattus norvegicus rno-miR-208b-3p mature miRNA
Sequence 62 - AUAAGACGAACAAAAGGU - 79
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249