Stem-loop rno-mir-126b

Accession

MI0015433

Description

Rattus norvegicus rno-mir-126b precursor miRNA

Gene family

MIPF0000115; mir-126

Literature search

63 open access papers mention rno-mir-126b
(587 sentences)

Sequence

6425652 reads, 8 reads per million, 497 experiments

gcacucccggugcugcgcuguugaccacgcauuauuacucacgguacgaguuugaagugucacagcgcgUACCAAAAGUAAUAAUGUGCUGucaccggcaaagacacggcuccaggcu
((.((.(((((.((..((((.((((..((((((((((((...((((((.((((((....))).))).))))))...))))))))))))..)))).))))..)))).)))....)))).

Structure

-  a  ---c   -  g  gc    u    ca            cac      a   -   a 
 gc cu    ccg gu cu  gcug ugac  cgcauuauuacu   gguacg guu uga g
 || ||    ||| || ||  |||| ||||  ||||||||||||   |||||| ||| |||  
 cg ga    ggc ca ga  cggc acuG  GUGUAAUAAUGA   CCAUgc cga acu u
u  -  ccuc   a  -  aa    c    UC            AAA      g   c   g 

Annotation confidence Not enough data

Genome context

chr3: 4042464-4042581 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-126b

Mature rno-miR-126b

• Accession: MIMAT0017843
• Description: Rattus norvegicus rno-miR-126b mature miRNA
• Sequence: 70 - UACCAAAAGUAAUAAUGUGCUG - 91
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249