Stem-loop sequence rno-mir-126b

Accession

MI0015433 (change log)

Previous IDs

rno-mir-3567

Description

Rattus norvegicus miR-126b stem-loop

Gene family

MIPF0000115; mir-126

Literature search

63 open access papers mention rno-mir-126b
(568 sentences)

Stem-loop

   -  a  ---c   -  g  gc    u    ca            cac      a   -   a 
5'  gc cu    ccg gu cu  gcug ugac  cgcauuauuacu   gguacg guu uga g
    || ||    ||| || ||  |||| ||||  ||||||||||||   |||||| ||| |||  
3'  cg ga    ggc ca ga  cggc acug  guguaauaauga   ccaugc cga acu u
   u  -  ccuc   a  -  aa    c    uc            aaa      g   c   g 

Deep sequencing

122 reads, 0 reads per million, 64 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr3: 4042464-4042581 [-]
• Overlapping transcripts:

  antisense

  ENSRNOT00000026318 ; EGFL7-201; intron 7

Clustered miRNAs

< 10kb from rno-mir-126b

• rno-mir-126a: chr3: 4042488-4042560 [+]
• rno-mir-126b: chr3: 4042464-4042581 [-]

Database links

• EntrezGene:Mir3567
• miRBase Tracker:MI0015433

Mature sequence rno-miR-126b

• Accession: MIMAT0017843
• Previous IDs: rno-miR-3567
• Sequence: 70 - uaccaaaaguaauaaugugcug - 91
• Deep sequencing: 73 reads, 42 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-126b
  • miRDB:rno-miR-126b

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).