Stem-loop sequence rno-mir-344a-2

AccessionMI0015432 (change log)
DescriptionRattus norvegicus miR-344a-2 stem-loop
Gene family MIPF0000267; mir-344
Literature search

8 open access papers mention rno-mir-344a-2
(73 sentences)

Stem-loop 
       ----  agg        ------          cc         uc        a 
5' gcag    cc   guuuuuac      cagucaggcu  uggcuagau  cagguacc a
   ||||    ||   ||||||||      ||||||||||  |||||||||  ||||||||  
3' cguc    gg   caaaaaug      gucaguccga  accgaucua  guccaugg c
       agaa  aaa        ucgaau          -a         --        u
Get sequence
Deep sequencing
17479 reads, 9.26 reads per million, 216 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 122373262-122373368 [-]
intergenic
Database links

Mature sequence rno-miR-344a-5p

Accession MIMAT0004654
Previous IDsrno-miR-344-5p
Sequence

21 -  

ucaggcuccuggcuagauu

 - 39

Get sequence
Deep sequencing66 reads, 24 experiments
Evidence experimental; SOLiD [1]

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).