Stem-loop sequence rno-mir-3065

Accession

MI0015429 (change log)

Description

Rattus norvegicus miR-3065 stem-loop

Gene family

MIPF0001105; mir-3065

Literature search

1 open access papers mention rno-mir-3065
(1 sentences)

Stem-loop

   -  g    g --a    c            a   a   a     g   cacug 
5'  ga gcug c   gcug ccucuucaacaa auc cug ugcug agu     u
    || |||| |   |||| |||||||||||| ||| ||| ||||| |||      
3'  cu cgac g   cggc ggagggguuguu uag gac acgac uca     g
   g  g    g guc    a            a   -   c     -   cccac 

Deep sequencing

517 reads, 0 reads per million, 175 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr10: 109195234-109195336 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000005839 ; Aatk-201; intron 7

Clustered miRNAs

< 10kb from rno-mir-3065

• rno-mir-3065: chr10: 109195234-109195336 [+]
• rno-mir-338: chr10: 109195251-109195316 [-]

Database links

• EntrezGene:Mir3065
• miRBase Tracker:MI0015429

Mature sequence rno-miR-3065-5p

• Accession: MIMAT0017839
• Sequence: 21 - ucaacaaaaucacugaugcu - 40
• Deep sequencing: 396 reads, 154 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3065-5p
  • miRDB:rno-miR-3065-5p

Mature sequence rno-miR-3065-3p

• Accession: MIMAT0017840
• Sequence: 60 - ucagcaccaggauauuguugggga - 83
• Deep sequencing: 119 reads, 83 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3065-3p
  • miRDB:rno-miR-3065-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).