Stem-loop sequence rno-mir-218b

Accession

MI0015428 (change log)

Previous IDs

rno-mir-3565

Description

Rattus norvegicus miR-218b stem-loop

Literature search

13 open access papers mention rno-mir-218b
(29 sentences)

Stem-loop

   u    --aa   --u   u  cg   caug        cgg        uuuacucauaccu g 
5'  guag    agc   gcg ga  uuc    gugcuuga   aaccaugu             c c
    ||||    |||   ||| ||  |||    ||||||||   ||||||||             |  
3'  cauc    uug   cgc cu  aag    cacgaacu   uugguaca             g a
   a    acua   cau   u  aa   acaa        aga        ------------c a 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr14: 66923083-66923196 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000005477 ; Slit2-201; intron 15

Clustered miRNAs

< 10kb from rno-mir-218b

• rno-mir-218b: chr14: 66923083-66923196 [+]
• rno-mir-218a-1: chr14: 66923083-66923192 [-]

Database links

• EntrezGene:Mir3565
• miRBase Tracker:MI0015428

Mature sequence rno-miR-218b

• Accession: MIMAT0017838
• Previous IDs: rno-miR-3565
• Sequence: 67 - caugguuagaucaagcacaa - 86
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-218b
  • miRDB:rno-miR-218b

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).