Stem-loop sequence rno-mir-3562

AccessionMI0015424 (change log)
DescriptionRattus norvegicus miR-3562 stem-loop
Literature search

2 open access papers mention rno-mir-3562
(8 sentences)

Stem-loop 
        uaua        ----g     auuu       u  c  g  g    ---   acu 
5' ucugg    ucaggcuu     cugug    ggggcag gg ug au ggag   ggg   c
   |||||    ||||||||     |||||    ||||||| || || || ||||   |||    
3' agacc    aguccgag     gacac    cccuguc cc ac ug ucuc   ccc   a
        -uag        aucug     ----       c  a  g  a    uau   gac
Get sequence
Deep sequencing
43 reads, 0 reads per million, 30 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr10: 109246744-109246855 [-]
sense
ENSRNOT00000005977 ; Azi1-201; exon 18
Clustered miRNAs
< 10kb from rno-mir-3562
rno-mir-3562chr10: 109246744-109246855 [-]
rno-mir-3594chr10: 109244637-109244701 [-]
Database links

Mature sequence rno-miR-3562

Accession MIMAT0017832
Sequence

26 -  

uuggggcaguggcuggauggga

 - 47

Get sequence
Deep sequencing20 reads, 15 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).