Stem-loop sequence rno-mir-3596d

Accession

MI0015418 (change log)

Description

Rattus norvegicus miR-3596d stem-loop

Gene family

MIPF0000002; let-7

Literature search

1 open access papers mention rno-mir-3596d
(2 sentences)

Stem-loop

   a   -c      -a   caa              aucuccuaaaca     aa 
5'  cuc  ucaggg  agg   uagauuguauaguu            gggua  a
    |||  ||||||  |||   ||||||||||||||            |||||  u
3'  gag  agucuc  ucc   aucuaacauaucaa            cccau  c
   -   au      ac   auc              ---------cac     ca 

Deep sequencing

2465 reads, 0 reads per million, 358 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr17: 16418217-16418313 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3596d

• rno-mir-3596b: chr17: 16419981-16420075 [-]
• rno-let-7d: chr17: 16419980-16420077 [+]
• rno-let-7f-1: chr17: 16418221-16418309 [+]
• rno-mir-3596d: chr17: 16418217-16418313 [-]
• rno-let-7a-1: chr17: 16417853-16417946 [+]

Database links

• EntrezGene:Mir3596d
• miRBase Tracker:MI0015418

Mature sequence rno-miR-3596d

• Accession: MIMAT0017823
• Sequence: 67 - cuauacaaucuacuaccuca - 86
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3596d
  • miRDB:rno-miR-3596d

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).