Stem-loop sequence rno-mir-3556a

Accession

MI0015416 (change log)

Description

Rattus norvegicus miR-3556a stem-loop

Gene family

MIPF0001124; mir-3556

Stem-loop

   -     gu      -----    aaucauuaua  c      aga     -c    aaau  u 
5'  gcaug  gcuuuu     cccc          ac gauuuc   uggug  uaga    uc a
    |||||  ||||||     ||||          || ||||||   |||||  ||||    ||  
3'  cgugu  uggaga     gggg          ug cuaaag   accac  gucu    ag u
   a     ac      acacu    aaucuccuac  a      aaa     aa    ---c  u 

Deep sequencing

9 reads, 0 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr4: 58343919-58344036 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3556a

• rno-mir-3556a: chr4: 58343919-58344036 [+]
• rno-mir-29a: chr4: 58343931-58344018 [-]
• rno-mir-3587: chr4: 58344283-58344345 [+]
• rno-mir-29b-1: chr4: 58344310-58344390 [-]

Database links

• EntrezGene:Mir3556a
• miRBase Tracker:MI0015416

Mature sequence rno-miR-3556a

• Accession: MIMAT0017821
• Sequence: 30 - cgauuucagauggugcua - 47
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3556a
  • miRDB:rno-miR-3556a

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).