miRBase entry: rno-mir-3556a

Stem-loop rno-mir-3556a


Accession
MI0015416
Description
Rattus norvegicus rno-mir-3556a precursor miRNA
Gene family
MIPF0001124; mir-3556


Sequence

2551496 reads, 0 reads per million, 499 experiments
gcauggugcuuuuccccaaucauuauaacCGAUUUCAGAUGGUGCUAgaaaauucuauugacucugaacaccaaaagaaaucagucauccucuaaggggucacaagaggucaugugca
((((((..(((((((((..........((.((((((...(((((.((((.............))))..)))))...)))))).))..........))))....))))).))))))...

Structure
---      ug     ----    aaucauuaua  C      AGA     -C    aaauu 
   gcaugg  cuuuu    cccc          ac GAUUUC   UGGUG  UAga     c
   ||||||  |||||    ||||          || ||||||   |||||  ||||     u
   uguacu  gagaa    gggg          ug cuaaag   accac  gucu     a
acg      -g     cacu    aaucuccuac  a      aaa     aa    caguu 


Annotation confidence Not enough data
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Genome context
chr4: 58343919-58344036 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-3556a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3556a

Accession MIMAT0017821
Description Rattus norvegicus rno-miR-3556a mature miRNA
Sequence 30 - CGAUUUCAGAUGGUGCUA - 47
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249