miRBase entry: rno-mir-3556b-1

Stem-loop rno-mir-3556b-1


Accession
MI0015414
Description
Rattus norvegicus rno-mir-3556b-1 precursor miRNA
Gene family
MIPF0001124; mir-3556


Sequence

325587 reads, 0 reads per million, 492 experiments
gcuggugcuuuucccccuacaucauaACCGAUUUCAAAUGGUGCUAgacaaaaacagacucugaacaccaggagaaaucggucagccuguguaagagauggaccagu
((((((.(.((((....((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....))))...)))).).))))))

Structure
      g u    cccc    ucaua         AAA     -C    caaa 
gcuggu c uuuc    uaca     ACCGAUUUC   UGGUG  UAga    a
|||||| | ||||    ||||     |||||||||   |||||  ||||    a
ugacca g agag    gugu     uggcuaaag   accac  gucu    c
      g u    -aau    ccgac         agg     aa    caga 


Annotation confidence Not enough data
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Genome context
chr1: 38238896-38239002 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3556b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3556b

Accession MIMAT0017818
Description Rattus norvegicus rno-miR-3556b mature miRNA
Sequence 27 - ACCGAUUUCAAAUGGUGCUA - 46
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249