Stem-loop sequence rno-mir-3553

Accession

MI0015410 (change log)

Description

Rattus norvegicus miR-3553 stem-loop

Literature search

1 open access papers mention rno-mir-3553
(1 sentences)

Stem-loop

       ---uc  u   -  cu    u      c  uc    --        acc   a 
5' cgga     ug cuc ug  cugu uauggc cu  ggua  auucacug   gag c
   ||||     || ||| ||  |||| |||||| ||  ||||  ||||||||   |||  
3' gucu     ac gag ac  gaca auaccg ga  ccau  uaagugac   cuu u
       cucac  u   g  ag    c      u  --    cu        --a   g 

Deep sequencing

19 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr4: 57463572-57463677 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000053574 ; Mir183-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-3553

• rno-mir-182: chr4: 57459773-57459834 [-]
• rno-mir-96: chr4: 57463366-57463471 [-]
• rno-mir-183: chr4: 57463569-57463678 [-]
• rno-mir-3553: chr4: 57463572-57463677 [+]

Database links

• EntrezGene:Mir3553
• miRBase Tracker:MI0015410

Mature sequence rno-miR-3553

• Accession: MIMAT0017814
• Sequence: 59 - cagugaauucuaccagugccaua - 81
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3553
  • miRDB:rno-miR-3553

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).