miRBase entry: rno-mir-3552

Stem-loop rno-mir-3552


Accession
MI0015409
Description
Rattus norvegicus rno-mir-3552 precursor miRNA
Gene family
MIPF0002093; mir-3552

Literature search
1 open access papers mention rno-mir-3552
(2 sentences)

Sequence

2784 reads, 14 reads per million, 85 experiments
ugugaauccagcugguucaAGGCUGCAGGCCCACUUCCCUuggcagauuuuuccauuucagggaguggggaaaguggcccuaaaccaucaaaauggauuauacau
((((((((((..(((((...((((((...((((((.(((((((.........)))....))))))))))....))))))...)))))......)))))).)))).

Structure
-    -      ----gc     caA      -AGG      U    ----   cag 
 ugug aaucca      ugguu   GGCUGC    CCCACU CCCU    ugg   a
 |||| ||||||      |||||   ||||||    |||||| ||||    |||   u
 acau uuaggu      accaa   ccggug    ggguga ggga    acc   u
u    a      aaaacu     auc      aaag      -    cuuu   uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 118121374-118121478 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3552
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3552

Accession MIMAT0017813
Description Rattus norvegicus rno-miR-3552 mature miRNA
Sequence 20 - AGGCUGCAGGCCCACUUCCCU - 40
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249