Stem-loop sequence rno-mir-3551

Accession

MI0015407 (change log)

Description

Rattus norvegicus miR-3551 stem-loop

Gene family

MIPF0000386; mir-743

Literature search

1 open access papers mention rno-mir-3551
(1 sentences)

Stem-loop

          ag    guc            uu   ga    ag 
5' uaugggc  uacu   uucaccauggug  uuu  caua  u
   |||||||  ||||   ||||||||||||  |||  ||||   
3' auacucg  auga   gggugguaccac  aaa  guau  a
          ga    aau            uu   --    cg 

Deep sequencing

54 reads, 0 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 151272824-151272905 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3551

• rno-mir-880: chrX: 151281988-151282065 [-]
• rno-mir-463: chrX: 151276029-151276106 [-]
• rno-mir-741: chrX: 151274356-151274451 [-]
• rno-mir-3551: chrX: 151272824-151272905 [-]
• rno-mir-471: chrX: 151272104-151272181 [-]

Database links

• EntrezGene:Mir3551
• miRBase Tracker:MI0015407

Mature sequence rno-miR-3551-5p

• Accession: MIMAT0017809
• Sequence: 15 - ucuucaccaugguguuuuugacau - 38
• Deep sequencing: 46 reads, 14 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3551-5p
  • miRDB:rno-miR-3551-5p

Mature sequence rno-miR-3551-3p

• Accession: MIMAT0017810
• Sequence: 48 - ugaaauucaccaugguggguaaa - 70
• Deep sequencing: 7 reads, 6 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3551-3p
  • miRDB:rno-miR-3551-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).