miRBase entry: rno-mir-3549

Stem-loop rno-mir-3549


Accession
MI0015405
Description
Rattus norvegicus rno-mir-3549 precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

47174 reads, 3 reads per million, 469 experiments
gaaaaugccgguccugggagccgaggacugggacuuuguaggccaguugaacugacacccucAUCUUGCCCGCAAAGACCCagcucucagcucccguccgccuuggaguucg
(((....(((((..(((((((.((((.(((((.((((((.(((.((.(((..........))).)).))).)))))).))))).)))).)))))))...)))..))..))).

Structure
-   aaug  --   -cc       c    a     a      a   c  u   acug 
 gaa    cc  ggu   ugggagc gagg cuggg cuuugu ggc ag uga    a
 |||    ||  |||   ||||||| |||| ||||| |||||| ||| || |||     
 cuu    gg  ccg   gcccucg cucu gaCCC GAAACG CCG UC Acu    c
g   --ga  uu   ccu       a    c     A      C   U  U   ccca 


Annotation confidence Not enough data
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Genome context
chr10: 67065885-67065996 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3549
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3549

Accession MIMAT0017807
Description Rattus norvegicus rno-miR-3549 mature miRNA
Sequence 63 - AUCUUGCCCGCAAAGACCC - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249