Stem-loop rno-mir-3548

Accession

MI0015404

Description

Rattus norvegicus rno-mir-3548 precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

1 open access papers mention rno-mir-3548
(2 sentences)

Sequence

396767 reads, 0 reads per million, 430 experiments

cuucggcgaguguugggucaccuuugaacaucguuaccagacaguguuagagucaagccaagaaaucCAGCACUGUCCGGUAAGAUGCCcacagaggcccagguaugcuuugguaggaag
((((.((((((((((((((..((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)).))))))...))))))..))..))))

Structure

    -g  --      ---      ac  u  aa    g     a         a  -g  aa 
cuuc  gc  gagugu   uggguc  cu ug  cauc uuacc gacaguguu ga  uc  g
||||  ||  ||||||   ||||||  || ||  |||| ||||| ||||||||| ||  ||  c
gaag  ug  uucgua   acccgg  ga ac  GUAG AAUGG CUGUCACGA cu  ag  c
    ga  gu      ugg      -a  c  CC    -     C         C  aa  aa 

Annotation confidence Not enough data

Genome context

chr5: 173489353-173489472 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-3548

Mature rno-miR-3548

• Accession: MIMAT0017806
• Description: Rattus norvegicus rno-miR-3548 mature miRNA
• Sequence: 68 - CAGCACUGUCCGGUAAGAUGCC - 89
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249