miRBase entry: rno-mir-3085

Stem-loop rno-mir-3085


Accession
MI0015403
Description
Rattus norvegicus rno-mir-3085 precursor miRNA
Gene family
MIPF0001193; mir-3085


Sequence

2663 reads, 6130 reads per million, 120 experiments
gucccuacucugggaaggugccauucugaaggccaggagucugaauaugagucacUCUGGCUGCUAUGGCCCCCUCccagggcuugggc
((((...((((((((.((.(((((......((((((((.((.......)).))...))))))...))))).)).))))))))...))))

Structure
    cua        a  u     ucugaa      ---  g  ug 
gucc   cucuggga gg gccau      ggccag   ga uc  a
||||   |||||||| || |||||      ||||||   || ||  a
cggg   gggaccCU CC CGGUA      UCGGUC   cu ag  u
    uuc        C  C     ---UCG      Uca  g  ua 


Annotation confidence High
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Genome context
chr1: 261524235-261524323 [-]

Database links

Mature rno-miR-3085

Accession MIMAT0017805
Description Rattus norvegicus rno-miR-3085 mature miRNA
Sequence 56 - UCUGGCUGCUAUGGCCCCCUC - 76
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249