miRBase entry: rno-mir-3547

Stem-loop rno-mir-3547


Accession
MI0015401
Description
Rattus norvegicus rno-mir-3547 precursor miRNA
Gene family
MIPF0001788; mir-3547

Literature search
1 open access papers mention rno-mir-3547
(1 sentences)

Sequence

597 reads, 16 reads per million, 110 experiments
cugacuuccaaggugggaagagggguggggcccgggacuguacccaugugaggacuauucuugagucccgcucuuguucUGAGCACCACCCCUCUCUCAGAUgguggcag
(((.((.(((...(((((.(((((((((.((.((((((.........(((.(((((.......))))))))....)))))).)).))))))))))))))..))).)))))

Structure
   a  u   agg     a         g  c      uguacccau   a     au 
cug cu cca   uggga gaggggugg gc cgggac         gug ggacu  u
||| || |||   ||||| ||||||||| || ||||||         ||| |||||  c
gac gg ggU   ACUCU CUCCCCACC CG GUcuug         cgc ccuga  u
   -  u   -AG     -         A  A      -----uucu   -     gu 


Annotation confidence Not enough data
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Genome context
chr10: 14603134-14603243 [-]

Database links

Mature rno-miR-3547

Accession MIMAT0017802
Description Rattus norvegicus rno-miR-3547 mature miRNA
Sequence 80 - UGAGCACCACCCCUCUCUCAGAU - 102
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249