miRBase entry: rno-mir-3544

Stem-loop rno-mir-3544


Accession
MI0015398
Description
Rattus norvegicus rno-mir-3544 precursor miRNA
Gene family
MIPF0001349; mir-3544


Sequence

39513 reads, 6 reads per million, 353 experiments
cgguugaagggggugaagaaaggcaucauauaggagcugaauggcugugcaaucAACUCCUGCAUGACGCCGUUCCCaccccccaacu
.(((((..(((((((..(((.(((.((((.((((((.(((.((......)).))).)))))).)))).))).))).))))))))))))

Structure
c     aa       aa   a   a    a      c   a  gc 
 gguug  gggggug  gaa ggc ucau uaggag uga ug  u
 |||||  |||||||  ||| ||| |||| |||||| ||| ||   
 ucaac  cccccaC  CUU CCG AGUA GUCCUC Acu ac  g
-     --       -C   G   C    C      A   a  gu 


Annotation confidence Not enough data
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Genome context
chr6: 133705932-133706019 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from rno-mir-3544
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3544

Accession MIMAT0017798
Description Rattus norvegicus rno-miR-3544 mature miRNA
Sequence 55 - AACUCCUGCAUGACGCCGUUCCC - 77
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249