Stem-loop rno-mir-3541

Accession

MI0015395

Description

Rattus norvegicus rno-mir-3541 precursor miRNA

Sequence

117 reads, 8 reads per million, 78 experiments

gcucaggacugcccagugugcaguggugugaggagggggcguauccuaggcaucacacuaccucUCCCUCCCCCUCACUGCAcagaguugggcuggucacagcc
(((...((((((((((((((((((((.(.(.((((((((.(.....(((........))).).)))))))))).))))))))))...)))))).))))..))).

Structure

-   cag    -      ---          u u a        c uaucc   gca 
 gcu   gacu gcccag   ugugcagugg g g ggaggggg g     uag   u
 |||   |||| ||||||   |||||||||| | | |||||||| |     |||    
 cga   cugg cggguu   acACGUCACU C C CCUCCCUc c     auc   c
c   -ca    u      gag          C - -        u ----c   aca 

Annotation confidence Not enough data

Genome context

chr2: 188487004-188487107 [+]

Mature rno-miR-3541

• Accession: MIMAT0017795
• Description: Rattus norvegicus rno-miR-3541 mature miRNA
• Sequence: 65 - UCCCUCCCCCUCACUGCA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249