Stem-loop sequence gga-mir-219b

Accession

MI0015382 (change log)

Description

Gallus gallus miR-219b stem-loop

Gene family

MIPF0000044; mir-219

Literature search

6 open access papers mention gga-mir-219b
(15 sentences)

Stem-loop

             aca   -        a         guu   ac g 
5' aaucucugcu   gau guccagac caauucuug   cgu  g c
   ||||||||||   ||| |||||||| |||||||||   |||  |  
3' uuagagacga   cua cagguuug guuaagaac   gcg  c u
             gga   a        c         -ac   -a c 

Deep sequencing

65391 reads, 660 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr17: 5485245-5485333 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-219b

• gga-mir-219a: chr17: 5485248-5485332 [+]
• gga-mir-219b: chr17: 5485245-5485333 [-]

Database links

• EntrezGene:MIR2964
• RNAcentral:URS000075D178_9031
• miRBase Tracker:MI0015382

Mature sequence gga-miR-219b

• Accession: MIMAT0016380
• Sequence: 53 - cacaagaauugcguuuggacaa - 74
• Deep sequencing: 62593 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075DE8E_9031
• Predicted targets:
  • TargetScanVert:gga-miR-219b
  • miRDB:gga-miR-219b

References

1. PMID:19891781 "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach" Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H BMC Genomics. 10:512(2009).