Stem-loop sequence gga-mir-219b

AccessionMI0015382 (change log)
DescriptionGallus gallus miR-219b stem-loop
Gene family MIPF0000044; mir-219
Literature search

6 open access papers mention gga-mir-219b
(15 sentences)

             aca   -        a         guu   ac g 
5' aaucucugcu   gau guccagac caauucuug   cgu  g c
   ||||||||||   ||| |||||||| |||||||||   |||  |  
3' uuagagacga   cua cagguuug guuaagaac   gcg  c u
             gga   a        c         -ac   -a c 
Get sequence
Deep sequencing
65391 reads, 660 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr17: 5485245-5485333 [-]
Clustered miRNAs
< 10kb from gga-mir-219b
gga-mir-219achr17: 5485248-5485332 [+]
gga-mir-219bchr17: 5485245-5485333 [-]
Database links

Mature sequence gga-miR-219b

Accession MIMAT0016380

53 - 


 - 74

Get sequence
Deep sequencing62593 reads, 5 experiments
Evidence experimental; Illumina [1]
Database links
Predicted targets


PMID:19891781 "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach" Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H BMC Genomics. 10:512(2009).