Stem-loop gga-mir-3530

Accession

MI0015381

Description

Gallus gallus gga-mir-3530 precursor miRNA

Literature search

1 open access papers mention gga-mir-3530
(1 sentences)

Sequence

588 reads, 9 reads per million, 4 experiments

gaaggcugaugcgcccGCUCUGCUCGCACCAUUGUGGcggccgaacaaagcaCAAUGGUGUGAGCUGGGAUGGgcgcuggccggcccuc
((.(((((..((((((((((.(((((((((((((((..............))))))))))))))).))).)))))))....))))).))

Structure

  a     --au       -   U               Gcggcc 
ga ggcug    gcgcccG CUC GCUCGCACCAUUGUG      g
|| |||||    ||||||| ||| |||||||||||||||       
cu ccggc    cgcgGGU GGG CGAGUGUGGUAACac      a
  c     cggu       A   U               gaaaca 

Annotation confidence High

Genome context

chr7: 25408507-25408595 [+]

Mature gga-miR-3530-3p

• Accession: MIMAT0016379
• Description: Gallus gallus gga-miR-3530-3p mature miRNA
• Sequence: 53 - CAAUGGUGUGAGCUGGGAUGG - 73
• Evidence: experimental ; Illumina [1-2]

Mature gga-miR-3530-5p

• Accession: MIMAT0027029
• Description: Gallus gallus gga-miR-3530-5p mature miRNA
• Sequence: 17 - GCUCUGCUCGCACCAUUGUGG - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45