miRBase entry: gga-mir-2188

Stem-loop gga-mir-2188


Accession
MI0015374
Description
Gallus gallus gga-mir-2188 precursor miRNA
Gene family
MIPF0000812; mir-2188

Literature search
5 open access papers mention gga-mir-2188
(24 sentences)

Sequence

10159 reads, 123 reads per million, 5 experiments
gagguuagauggcacuuugggguuuccuucugaggaauaucagaccugugggaAAGGUCCAACCUCACAUGUCCUguauagaauaaggaggGAUAUAUGUGGUCAGACCUAUCccacaggcccuguauucuuacacaagugcagagaccuugacaugccaucugaucuu
((((((((((((((..(((((((((((((.(((((((((.(((.(((((((((.(((((..(((.((.(((((((..............))))))).)).)))..))))).)))))))))..)))))))))).)).)))....))))))))))..))))))))))))))

Structure
              cu          ----   c  -       u   -a         A     CA   U  C       guauag 
gagguuagauggca  uugggguuuc    cuu ug aggaaua cag  ccuguggga AGGUC  ACC CA AUGUCCU      a
||||||||||||||  ||||||||||    ||| || ||||||| |||  ||||||||| |||||  ||| || |||||||       
uucuagucuaccgu  aguuccagag    gaa ac uucuuau guc  ggacaccCU UCCAG  UGG GU UAUAGgg      a
              ac          acgu   c  a       -   cc         A     AC   U  A       aggaau 


Annotation confidence High
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Genome context
chr22: 2664305-2664473 [-]

Database links

Mature gga-miR-2188-5p

Accession MIMAT0016372
Description Gallus gallus gga-miR-2188-5p mature miRNA
Sequence 54 - AAGGUCCAACCUCACAUGUCCU - 75
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

Mature gga-miR-2188-3p

Accession MIMAT0027028
Description Gallus gallus gga-miR-2188-3p mature miRNA
Sequence 92 - GAUAUAUGUGGUCAGACCUAUC - 113
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19891781
    Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
    Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
    BMC Genomics (2009) 10:512

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45