Stem-loop sequence gga-mir-2188

AccessionMI0015374 (change log)
DescriptionGallus gallus miR-2188 stem-loop
Gene family MIPF0000812; mir-2188
Literature search

5 open access papers mention gga-mir-2188
(20 sentences)

Stem-loop 
                 cu ug       ----   c  -       u   -a         a     ca   u  c       guauag 
5' gagguuagauggca  u  ggguuuc    cuu ug aggaaua cag  ccuguggga agguc  acc ca auguccu      a
   ||||||||||||||  |  |||||||    ||| || ||||||| |||  ||||||||| |||||  ||| || |||||||       
3' uucuagucuaccgu  a  uccagag    gaa ac uucuuau guc  ggacacccu uccag  ugg gu uauaggg      a
                 ac gu       acgu   c  a       -   cc         a     ac   u  a       aggaau
Get sequence
Deep sequencing
21013 reads, 140 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr22: 2664305-2664473 [-]
sense
ENSGALT00000005683 ; CHANK1-201; intron 2
Database links

Mature sequence gga-miR-2188-5p

Accession MIMAT0016372
Sequence

54 -  

aagguccaaccucacauguccu

 - 75

Get sequence
Deep sequencing11658 reads, 5 experiments
Evidence experimental; Illumina [1-2]
Database links
Predicted targets

Mature sequence gga-miR-2188-3p

Accession MIMAT0027028
Sequence

92 -  

gauauauguggucagaccuauc

 - 113

Get sequence
Deep sequencing9205 reads, 5 experiments
Evidence experimental; Illumina [2]
Predicted targets

References

1
PMID:19891781 "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach" Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H BMC Genomics. 10:512(2009).
2
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).