Stem-loop bra-MIR2111b

Accession

MI0015373

Description

Brassica rapa bra-MIR2111b precursor miRNA

Gene family

MIPF0000754; MIR2111

Sequence

ggugaagaacuggUAAUCUGCAUCCUGAGGUUUAaaaauuuauaggcaauuaaaacaugcaaauguguguaugguuuuuuaAUCCUCGGGAUACGGAUUACCucuuccuuacu
(((((.(((..(((((((((.(((((((((.(((((((.(((((.((.......((((....)))))).))))).))))))).))))))))).)))))))))..))).)))))

Structure

     a   cu         C         U       u     g  aauuaaa    g 
gguga gaa  ggUAAUCUG AUCCUGAGG UUAaaaa uuaua gc       acau c
||||| |||  ||||||||| ||||||||| ||||||| ||||| ||       ||||  
ucauu cuu  CCAUUAGGC UAGGGCUCC Aauuuuu gguau ug       ugua a
     c   cu         A         U       u     g  -------    a 

Annotation confidence Not enough data

Genome context

chrA2: 1604685-1604797 [+]

Mature bra-miR2111b-5p

• Accession: MIMAT0016370
• Description: Brassica rapa bra-miR2111b-5p mature miRNA
• Sequence: 14 - UAAUCUGCAUCCUGAGGUUUA - 34
• Evidence: not_experimental

Mature bra-miR2111b-3p

• Accession: MIMAT0016371
• Description: Brassica rapa bra-miR2111b-3p mature miRNA
• Sequence: 82 - AUCCUCGGGAUACGGAUUACC - 102
• Evidence: not_experimental

References

1. PubMed ID: 19854858
   Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
   "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
   "Plant Physiol (2009) 151:2120-2132