miRBase entry: bra-MIR2111a

Stem-loop bra-MIR2111a


Accession
MI0015372
Description
Brassica rapa bra-MIR2111a precursor miRNA
Gene family
MIPF0000754; MIR2111

Literature search
1 open access papers mention bra-MIR2111a
(1 sentences)

Sequence

cagaugacaaguauuggugaggaccgggUAAUCUGCAUCCUGAGGUUUAaagcuugauuauacgcauaacaugccgacgcauauaacuauguguuuuagaauagcuuuuaGUCCUCGGGAUGCGGAUUACCucuuccuuacuauacguacacgguuacaug
((..((((..(((((((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))........))))))....))))))))))))))))))))..)))))))))...))))...))))..))

Structure
  ga    -aa    ---         cc                    -UUU      -ugauuau       ---ac    c 
ca  ugac   guau   uggugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu        acgcaua     augc g
||  ||||   ||||   |||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||  
gu  auug   caug   aucauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga        uguguau     uacg a
  ac    gca    cau         uc                    UGau      uaagauuu       caaua    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrA3: 15829023-15829183 [-]

Database links

Mature bra-miR2111a-5p

Accession MIMAT0016368
Description Brassica rapa bra-miR2111a-5p mature miRNA
Sequence 29 - UAAUCUGCAUCCUGAGGUUUA - 49
Evidence not_experimental

Mature bra-miR2111a-3p

Accession MIMAT0016369
Description Brassica rapa bra-miR2111a-3p mature miRNA
Sequence 111 - GUCCUCGGGAUGCGGAUUACC - 131
Evidence not_experimental

References

  1. PubMed ID: 19854858
    Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
    "Plant Physiol (2009) 151:2120-2132