Stem-loop lja-MIR2111

Accession

MI0015371

Description

Lotus japonicus lja-MIR2111 precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

0 open access papers mention lja-MIR2111
(0 sentences)

Sequence

ucaaaccuacuuggaugagucaguauagguuuaggaucaggUAAUCUGCAUCCUGAGGUUUAaaacaauagguuuauugugucuaGUCCUUAGGAUGCAGAUUACCgcuuccuaauguuaucaccaauagauggagcauuuaaaucaguuuga
((((((....(((((((..(((.(((.(((((((((...(((((((((((((((((((.(((..((((((....))))))...))).)))))))))))))))))))...)))))).......))).)))..)))..)))))))....))))))

Structure

      cuac       ag   -g   a   -------      uca                   U   -aa      g 
ucaaac    uuggaug  uca  uau ggu       uuagga   ggUAAUCUGCAUCCUGAGG UUA   acaaua g
||||||    |||||||  |||  ||| |||       ||||||   ||||||||||||||||||| |||   ||||||  
aguuug    aauuuac  ggu  aua cca       aauccu   CCAUUAGACGUAGGAUUCC Gau   uguuau u
      acua       ga   ag   a   cuauugu      ucg                   U   cug      u 

Annotation confidence Not enough data

Genome context

Chr1: 42456511-42456663 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR2111

Mature lja-miR2111-5p

• Accession: MIMAT0016366
• Description: Lotus japonicus lja-miR2111-5p mature miRNA
• Sequence: 42 - UAAUCUGCAUCCUGAGGUUUA - 62
• Evidence: not_experimental

Mature lja-miR2111-3p

• Accession: MIMAT0016367
• Description: Lotus japonicus lja-miR2111-3p mature miRNA
• Sequence: 86 - GUCCUUAGGAUGCAGAUUACC - 106
• Evidence: not_experimental

References

1. PubMed ID: 19854858
   Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
   "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
   "Plant Physiol (2009) 151:2120-2132