miRBase entry: sja-mir-2d

Stem-loop sja-mir-2d


Accession
MI0015302
Description
Schistosoma japonicum sja-mir-2d precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
7 open access papers mention sja-mir-2d
(23 sentences)

Sequence

cgaccaguucGUCAUCCAUGGAUUGUGAUUUUcggacuccauguuucauuaagugaaUAUCACAGUCCUGCUUAGGUGAcgaauuucgu
(((..(((((((((((((.((((((((((.(((..(((..(((...)))..)))))).))))))))))))....)))))))))))))).

Structure
-   cc           ----  U          U   gg   cc   u 
 cga  aguucGUCAUC    CA GGAUUGUGAU UUc  acu  aug  
 |||  |||||||||||    || |||||||||| |||  |||  ||| u
 gcu  uuaagcAGUGG    GU CCUGACACUA aag  uga  uac  
u   --           AUUC  -          U   --   au   u 


Annotation confidence Not enough data
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Genome context
CABF01011791.1: 3049-3137 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sja-mir-2d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sja-miR-2d-5p

Accession MIMAT0016278
Description Schistosoma japonicum sja-miR-2d-5p mature miRNA
Sequence 11 - GUCAUCCAUGGAUUGUGAUUUU - 32
Evidence experimental
Illumina [1]

Mature sja-miR-2d-3p

Accession MIMAT0016279
Description Schistosoma japonicum sja-miR-2d-3p mature miRNA
Sequence 58 - UAUCACAGUCCUGCUUAGGUGA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596