miRBase entry: sja-mir-2c

Stem-loop sja-mir-2c


Accession
MI0015301
Description
Schistosoma japonicum sja-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
7 open access papers mention sja-mir-2c
(24 sentences)

Sequence

uucaggcgcaACCCUUGUUCGACUGUGAUGUGauugaaauuagcccaUAUCACAGCCGUGCUUAAGGGCuucgucgaaa
(((.((((...(((((((.((.((((((((((.............)))))))))).)).))..)))))...))))))).

Structure
-   a    caA     --  U  A          auuga 
 uuc ggcg   CCCUU  GU CG CUGUGAUGUG     a
 ||| ||||   |||||  || || ||||||||||     a
 aag cugc   GGGAA  CG GC GACACUAUac     u
a   -    uuC     UU  U  C          ccgau 


Annotation confidence Not enough data
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Genome context
CABF01011791.1: 3159-3237 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sja-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sja-miR-2c-5p

Accession MIMAT0016276
Description Schistosoma japonicum sja-miR-2c-5p mature miRNA
Sequence 11 - ACCCUUGUUCGACUGUGAUGUG - 32
Evidence experimental
Illumina [1]

Mature sja-miR-2c-3p

Accession MIMAT0016277
Description Schistosoma japonicum sja-miR-2c-3p mature miRNA
Sequence 48 - UAUCACAGCCGUGCUUAAGGGC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596