Stem-loop sja-mir-219

Accession

MI0015295

Description

Schistosoma japonicum sja-mir-219 precursor miRNA

Gene family

MIPF0000044; mir-219

Literature search

3 open access papers mention sja-mir-219
(5 sentences)

Sequence

ucugugaacaaucgauucacUGAUUGUCCAUUCGCAUUUCUuguuagaaacauuuucaauuauuaucauuauucaaugauaaugaugauaauauuuaauucacaAGAGGUGUUAAUGGACAUCAUAugaucgauuauuaaucaucu
...((((..((((((((...((((.(((((((.(((((((((((..(((.........(((((((((((((((....)))))))))))))))......)))))))))))))).)))))))))))...)))))))).....))))..

Structure

ucu    ---ac        cac    U       C           ua   acauuuuca               c 
   guga     aaucgauu   UGAU GUCCAUU GCAUUUCUugu  gaa         auuauuaucauuauu a
   ||||     ||||||||   |||| ||||||| |||||||||||  |||         |||||||||||||||  
   uacu     uuagcuag   ACUA CAGGUAA UGUGGAGAaca  cuu         uaauaguaguaauag a
-uc    aauua        uAU    -       U           --   ---aauuua               u 

Annotation confidence Not enough data

Genome context

CABF01007005.1: 4661-4806 [-]

Mature sja-miR-219-5p

• Accession: MIMAT0016267
• Description: Schistosoma japonicum sja-miR-219-5p mature miRNA
• Sequence: 21 - UGAUUGUCCAUUCGCAUUUCU - 41
• Evidence: experimental ; Illumina [1]

Mature sja-miR-219-3p

• Accession: MIMAT0016268
• Description: Schistosoma japonicum sja-miR-219-3p mature miRNA
• Sequence: 105 - AGAGGUGUUAAUGGACAUCAUA - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596