Stem-loop sja-mir-124

Accession

MI0015292

Description

Schistosoma japonicum sja-mir-124 precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

8 open access papers mention sja-mir-124
(21 sentences)

Sequence

uauauguaugCCAUUUUCCGCGAUUGCCUUGAUUUguuaaaagaaaaugauucacaacaaaauauUAAGGCACGCGGUGAAUGUCAuccacggugc
....((.(((.(((((.(((((..((((((((((((((....(((.....)))..)))))...)))))))))))))).))))).))).))......

Structure

--uaua  u   C     U     AU         ---     aaaa   a 
      ug aug CAUUU CCGCG  UGCCUUGAU   UUguu    gaa a
      || ||| ||||| |||||  |||||||||   |||||    ||| u
      ac uAC GUAAG GGCGC  ACGGAAUua   aacaa    cuu g
cguggc  c   U     U     --         uaa     --ca   a 

Annotation confidence Not enough data

Genome context

CABF01021699.1: 6318-6413 [+]

Mature sja-miR-124-5p

• Accession: MIMAT0016262
• Description: Schistosoma japonicum sja-miR-124-5p mature miRNA
• Sequence: 11 - CCAUUUUCCGCGAUUGCCUUGAUUU - 35
• Evidence: experimental ; Illumina [1]

Mature sja-miR-124-3p

• Accession: MIMAT0016263
• Description: Schistosoma japonicum sja-miR-124-3p mature miRNA
• Sequence: 66 - UAAGGCACGCGGUGAAUGUCA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596