miRBase entry: sja-mir-61

Stem-loop sja-mir-61


Accession
MI0015290
Description
Schistosoma japonicum sja-mir-61 precursor miRNA
Gene family
MIPF0001758; mir-61_2

Literature search
3 open access papers mention sja-mir-61
(6 sentences)

Sequence

cauucuaacuuuacaucacaUGACUAGAAAGUGCACUCACUUccaucucaguacagagcaucauuuagagaaauguguccacaguaaaaauucccuauguuacguaaauuugcguaaguucaauguguauuguagauuuauua
...((((.(..((((((((((..(((((..((((.((.(((........)))..)).))))..)))))....)))))......................(((((((....))))))).......)))))..))))).......

Structure
----cau    a uu     -----------------------------------------------     --GA     AA    A  -C   Ucc 
       ucua c  uacau                                               cacaU    CUAGA  GUGC CU  ACU   a
       |||| |  |||||                                               |||||    |||||  |||| ||  |||    
       agau g  augug                                               gugua    gauuu  uacg ga  uga   u
auuauuu    - uu     uaacuugaaugcguuuaaaugcauuguaucccuuaaaaaugacaccu     aaga     ac    a  ca   cuc 


Annotation confidence Not enough data
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Genome context
CABF01036171.1: 1214-1356 [+]

Database links

Mature sja-miR-61

Accession MIMAT0016259
Description Schistosoma japonicum sja-miR-61 mature miRNA
Sequence 21 - UGACUAGAAAGUGCACUCACUU - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596