Stem-loop sja-mir-2b

Accession

MI0015284

Description

Schistosoma japonicum sja-mir-2b precursor miRNA

Gene family

MIPF0000049; mir-2

Literature search

8 open access papers mention sja-mir-2b
(31 sentences)

Sequence

agguggugcgCGUCUCAAAGGACUGUGAGCCAacguaauuacugUAUCACAGCCCUGCUUGGGACACAgccuaccugc
((((((.(((.((((((((((.((((((..((..........))..)))))).)))..))))))).).))))))))..

Structure

--      u  - C       --   A      GC  acgu 
  aggugg gc g GUCUCAA  AGG CUGUGA  CA    a
  |||||| || | |||||||  ||| ||||||  ||     
  uccauc cg C CAGGGUU  UCC GACACU  gu    a
cg      -  A A       CG   C      AU  cauu 

Annotation confidence Not enough data

Genome context

CABF01007682.1: 2869-2946 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sja-mir-2b

Mature sja-miR-2b-5p

• Accession: MIMAT0016247
• Description: Schistosoma japonicum sja-miR-2b-5p mature miRNA
• Sequence: 11 - CGUCUCAAAGGACUGUGAGCCA - 32
• Evidence: experimental ; Illumina [1]

Mature sja-miR-2b-3p

• Accession: MIMAT0016248
• Description: Schistosoma japonicum sja-miR-2b-3p mature miRNA
• Sequence: 45 - UAUCACAGCCCUGCUUGGGACACA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596