miRBase entry: ppy-mir-1197

Stem-loop ppy-mir-1197

Accession

MI0015185

Description

Pongo pygmaeus ppy-mir-1197 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

acuuccugguauuugaagaugcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucaauauca
......(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..)))))))

Structure

acuucc       -u     ugc   u       g   -g    - uuu 
      ugguauu  gaaga   ggu gaccaug ugu  uacg c   a
      |||||||  |||||   ||| ||||||| |||  |||| |   u
      acuauaa  cuUCU   UCA CUGGUAC ACA  AUgc g   u
------       cu     ---   U       -   GG    a uau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr14: 102586977-102587064 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppy-mir-1197

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-1197

Accession	MIMAT0016149
Description	Pongo pygmaeus ppy-miR-1197 mature miRNA
Sequence	57 - UAGGACACAUGGUCUACUUCU - 77
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64