miRBase entry: ppy-mir-1185-2

Stem-loop ppy-mir-1185-2


Accession
MI0015184
Description
Pongo pygmaeus ppy-mir-1185-2 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

uuugguacuuaaagAGAGGAUACCCUUUGUAUGUUcacuugauuaauggcgaauauacagggggagacucuuauuugcguaucaaa
.(((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))).

Structure
u       u    -     GA A              a  uga 
 uugguac uaaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 


Annotation confidence Not enough data
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Genome context
chr14: 102606330-102606415 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ppy-mir-1185-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-1185

Accession MIMAT0016148
Description Pongo pygmaeus ppy-miR-1185 mature miRNA
Sequence 15 - AGAGGAUACCCUUUGUAUGUU - 35
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64