miRBase entry: ppy-mir-890

Stem-loop ppy-mir-890

Accession

MI0015160

Description

Pongo pygmaeus ppy-mir-890 precursor miRNA

Gene family

MIPF0000386; mir-743

Sequence

ggaagugcccUACUUGGAAAGGCAUCAGUUGcuuaaauuacauguaacuauucccuuucugaguagaguaaagcuua
..((((((.(((((((((((((.(..((((((...........))))))..).))))))))))))).))...)))).

Structure

gg    ---  c             C UC      uuaa 
  aagu   gc cUACUUGGAAAGG A  AGUUGc    a
  ||||   || ||||||||||||| |  ||||||    u
  uucg   ug gaugagucuuucc u  ucaaug    u
-a    aaa  a             c ua      uaca

Annotation confidence Not enough data

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Genome context

chrX: 145868166-145868242 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-890

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-890

Accession	MIMAT0016125
Description	Pongo pygmaeus ppy-miR-890 mature miRNA
Sequence	11 - UACUUGGAAAGGCAUCAGUUG - 31
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64