miRBase entry: ppy-mir-875

Stem-loop ppy-mir-875

Accession

MI0015152

Description

Pongo pygmaeus ppy-mir-875 precursor miRNA

Gene family

MIPF0000424; mir-875

Sequence

uuagugguacUAUACCUCAGUUUUAUCAGGUGuucuuaaaaucaCCUGGAAAUACUGAGGUUGUGucucacugaac
(((((((.((...((((((((.((.(((((((..........))))))).)).))))))))...)).)))))))..

Structure

--       u  UAU        U  A       uucu 
  uuagugg ac   ACCUCAGU UU UCAGGUG    u
  ||||||| ||   |||||||| || |||||||     
  agucacu uG   UGGAGUCA AA GGUCCac    a
ca       c  UGU        U  A       uaaa

Annotation confidence Not enough data

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Genome context

chr8: 106012672-106012747 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-875

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-875-5p

Accession	MIMAT0016113
Description	Pongo pygmaeus ppy-miR-875-5p mature miRNA
Sequence	11 - UAUACCUCAGUUUUAUCAGGUG - 32
Evidence	not_experimental

Mature ppy-miR-875-3p

Accession	MIMAT0016114
Description	Pongo pygmaeus ppy-miR-875-3p mature miRNA
Sequence	45 - CCUGGAAAUACUGAGGUUGUG - 65
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64