miRBase entry: ppy-mir-654

Stem-loop ppy-mir-654

Accession

MI0015129

Description

Pongo pygmaeus ppy-mir-654 precursor miRNA

Gene family

MIPF0000409; mir-654

Sequence

ggguaaguggaaagaUGGUGGGCCGCAGAACAUGUGCugaguucgugccaUAUGUCUGCUGACCAUCACCUUuagaagccc
((((......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))....))))

Structure

    aagugg    a      G C     A      - uga 
gggu      aaag UGGUGG C GCAGA CAUGUG C   g
||||      |||| |||||| | ||||| |||||| |   u
cccg      uUUC ACUACC G CGUCU GUAUac g   u
    --aaga    C      A U     -      c ugc

Annotation confidence Not enough data

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Genome context

chr14: 102602352-102602432 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ppy-mir-654

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-654-5p

Accession	MIMAT0016087
Description	Pongo pygmaeus ppy-miR-654-5p mature miRNA
Sequence	16 - UGGUGGGCCGCAGAACAUGUGC - 37
Evidence	not_experimental

Mature ppy-miR-654-3p

Accession	MIMAT0016088
Description	Pongo pygmaeus ppy-miR-654-3p mature miRNA
Sequence	51 - UAUGUCUGCUGACCAUCACCUU - 72
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64