miRBase entry: ppy-mir-647

Stem-loop ppy-mir-647


Accession
MI0015123
Description
Pongo pygmaeus ppy-mir-647 precursor miRNA
Gene family
MIPF0000939; mir-647


Sequence

aggaaguguuggccuGUGGCUCCACUCACUUCCUUCagccccaggaagccuuggucuggggcaggagggagggccaggcagggcugggggccug
..........(((((.((((((..((..((((((((.((((((((.........))))))))..))))))))...))...)))))).)))))..

Structure
aggaaguguu     G      -CA  -CA        -a        aag 
          ggccu UGGCUC   CU   CUUCCUUC  gccccagg   c
          ||||| ||||||   ||   ||||||||  ||||||||   c
          ccggg gucggg   ga   ggagggag  cggggucu   u
--------gu     g      acg  ccg        ga        ggu 


Annotation confidence Not enough data
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Genome context
chr20: 62382410-62382503 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-647
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-647

Accession MIMAT0016081
Description Pongo pygmaeus ppy-miR-647 mature miRNA
Sequence 16 - GUGGCUCCACUCACUUCCUUC - 36
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64