Stem-loop ppy-mir-556

Accession

MI0015050

Description

Pongo pygmaeus ppy-mir-556 precursor miRNA

Gene family

MIPF0000475; mir-556

Sequence

gauagugauaagaaaGAUGAGCUCAUUGUAAUAUGAGcuucauuuaugcauuucAUAUUACAAUUAGCUCAUCUUUuuuaugacuaccuucaaca
..((((.((((((((((((((((.((((((((((((((.........))...)))))))))))).)))))))))))))))).)))).........

Structure

-------ga    g                C            ---  uuc 
         uagu auaagaaaGAUGAGCU AUUGUAAUAUGA   Gc   a
         |||| |||||||||||||||| ||||||||||||   ||   u
         auca uauuuUUUCUACUCGA UAACAUUAUAcu   cg   u
acaacuucc    g                U            uua  uau 

Annotation confidence Not enough data

Genome context

chr1: 89027927-89028021 [-]

Mature ppy-miR-556-5p

• Accession: MIMAT0016002
• Description: Pongo pygmaeus ppy-miR-556-5p mature miRNA
• Sequence: 16 - GAUGAGCUCAUUGUAAUAUGAG - 37
• Evidence: not_experimental

Mature ppy-miR-556-3p

• Accession: MIMAT0016003
• Description: Pongo pygmaeus ppy-miR-556-3p mature miRNA
• Sequence: 55 - AUAUUACAAUUAGCUCAUCUUU - 76
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64